1) with a big pict it is slow
2) the only reference you have is when you position the dialog along the line. That is not very accurate.
I just wanted to point to a simple, but very convenient functionality, which was not yet in paint.net.
the method youu give is a kind of workaround.
For my job i have a bunch of pics with photographic screenshots of a PLC screen (no direct printscreen possible)
with photoshop the alignment is quick and correct. with paint.net its a lot of work